Smart Payroll Management Software for Singapore Businesses

Transform your payroll management with our all-in-one payroll software Singapore. Seamlessly automate and submit your employee’s CPF, income tax, and OED all from one payroll software.

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Why Choose Our Payroll Management Singapore

Trusted by over 1,000 businesses across Southeast Asia, our Payroll Software Singapore simplifies payroll processing, ensures compliance, and automates calculations for accuracy and efficiency.

Accurate & Smart Payroll Calculations

Easily configure payroll calculations based on your organization’s policies. Define your own rules, formulas, and exceptions to ensure 100% accuracy — from basic salary to complex earnings and deductions.

Anytime, Anywhere Payslip Access

Let employees view and download payslips securely via our mobile app or browser — no delays, no printing, and no manual distribution. Keep your team informed, wherever they are.

Automated Backpay Calculations

Backpay calculations automatically include all relevant components: statutory contributions, fixed/variable allowances, and deductions. Keep salary adjustments accurate and fully compliant.

Centralized Payroll Setup

No need to create multiple systems or rulesets. Our unified engine supports various pay structures, departments, and cycles — all managed under a centralized payroll setup.

Flexible Payroll Cycles & Periods

Support unlimited payroll groups, pay periods, cycles, and cut-off dates. Whether you run weekly, bi-weekly, or monthly payroll — or a mix — our system adapts without manual workarounds.

Seamless Integration with Core HR Modules

Payroll is fully integrated with your Leave, Benefits, and Attendance data. It also connects with financial systems to automate wage cost allocation and ensure accurate journal posting.

Transparent Payslip Breakdown with Auto Explanation

Each payslip includes a detailed breakdown and explanation of calculations, empowering employees to self-verify earnings and deductions without needing to contact HR.

Boost Efficiency with flexHR® Payroll Software Singapore

flexHR® Payroll Software Singapore goes beyond just processing salaries. Its strength lies in proactive alerts and user-friendly data manipulation for powerful decision support.

ProActive Alerts

User defined rules of key events are auto flagged for follow-up action, e.g. wage variance of +/-30%, 5% attendance shortfall at work centre, work permit expiry, etc.

Reports & Analytics

Great user experience in using existing and creating new reports by decision makers. Reported data is security limited to the authorized scope.

ProActive Analytics

Enables auto email of key analytics to users when the defined rules are met, thus increasing productivity.

Payroll Software Integrations Built for Singapore Business

flexHR® Payroll Software Singapore is designed to fit into your existing workflows seamlessly and help you run payroll smoothly and efficiently in minutes!

Attendance Management System

Link employee attendance data directly to payroll for accurate time-based salary calculations

  • Works with most available clocking devices
  • Real-time attendance tracking via mobile app
  • Supports clocking device scheduled auto data polling or manual polling
  • Includes shift scheduling, overtime planning, and approval workflow
  • AI heuristic for paired clock-ins across workdays, rest days, and holidays
  • Integrated to e-Leave, Benefits, Payroll & Performance Appraisal
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Benefits Package Management

Streamline benefits tracking and link entitlements directly to payroll

  • Set user-defined claim limits and benefit types
  • Covers loans, medical, retirement, scholarships & more
  • Automate payroll deductions for benefit repayments
  • Track due dates for time-sensitive benefits like medical checkups
  • Full integration with the Payroll module
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Flexi-Benefits Management

Give employees the flexibility to manage benefits based on their needs

  • Define swap rules and limits for benefit items
  • Configure eligibility by staff level, package, or benefit type
  • Supports redemption through vouchers and non-cash options
  • Fully integrated into Payroll and Benefits workflows
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Claims Management System

Simplify reimbursement workflows and auto-link claims to payroll disbursement

  • Seamlessly link claims to payroll for easy and direct payout
  • Unified portal for submitting all types of claims
  • “Snap & Submit” on-the-fly claim submissions with file attachments via mobile
  • Customize approval workflows with rule-based logic
  • Visual dashboard to track and analyze claim trends
  • Receive mobile and email alerts for real-time updates
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Leave Management System

Track, approve, and sync leave data across departments — directly into payroll.

  • Define custom leave types (e.g. Haji, Study, Sabbatical)
  • Set entitlements based on staff grade, category, or employment level
  • Configure forfeiture, carry forward, and yearly utilization rules
  • Fully integrated with e-Leave mobile app, Attendance, Payroll (for unpaid leave deduction), Training, and Benefits modules
*click the photo to enlarge

What Our Clients Say

See what our valued clients talk about our HR software Singapore

I am happy to recommend to you the total HR solutions of flexHR®. I was impressed by the excellent support from flexHR®. All of the support personnel are helpful, knowledgeable and easily accessible.

They have not only helped us in terms of the system support, they have also shared with us their valuable opinions and suggestions on how to improve our current HR practice based on their experience in HR expertise.

Zaini binti Md Yasin, Senior Manager - Manufacturing Company

I started using their software solution one year ago and my business has faced major positive changes since then.

The key factor for choosing flexHR® as HR system provider is they are always dedicated to our needs and requirements as well as their ability to supply a comprehensive HR solution from HRMS core system until the strategic analysis system within the means of our budget. We really appreciate the high levels of services that flexHR® repeatedly provide.

Cheah Poh Leng, HR Manager - Construction Company

VSM has been working with our company for the last 4 years and has been providing HR software that effectively and efficiently improves our daily operation tasks. The use of services saved us a lot of time and energy in managing all the administrative tasks that previously spent in managing payroll calculation

Noratishah Binti Mohamed, Senior Manager, HRA - Manufacturing Company

Full Range of Flexible HR Software

Run your entire HR department from a single platform — from analytics to engagement

Business Analytics

Flexible infographic tools for better insights into the business.

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Employee Self Service

Empower staff with mobile access to payslips, leave, claims, and profiles.

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Payroll Management

Automate CPF, IR8A, and salary disbursements — fast and compliant.

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Succession Planning 

Nurture future leaders and retain top talent with development pipelines.

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Talent Management

Track high performers, career paths, and role succession.

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Workforce Engagement

Enable anytime, anywhere communication and collaboration.

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Explore our flexHR®

Experience the full power of cloud-based HR software built for Singaporean businesses. Get a free quote or consult us with our expert team.
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FAQs About Payroll Software Singapore

There are four main types of payroll processing methods:

  • Manual payroll processing – Done manually with spreadsheets or calculations.
  • Outsourced payroll services – Payroll is handled by a third-party provider.
  • Payroll software solutions – In-house software automates and manages payroll processes.
  • Professional Employer Organisations (PEOs) – External HR partners that manage payroll and employment on your behalf.

Interested in an in-house payroll software solution? Let us know how we can help!

Yes, our payroll software is fully compliant with Singapore’s CPF and IRAS regulations. It automates statutory calculations, IR8A generation, and e-submission to CPF and IRAS portals — reducing compliance risk and manual effort.

Yes! Whether you have 5 employees or 5,000, our system scales with your business. It’s designed to handle complex payroll structures while remaining easy to use for SMEs and large enterprises alike.

Get in touch with our team for a free customized evaluation of HR and payroll software needs of your business.

We use enterprise-grade encryption, access control, role-based permissions, and detailed audit logs to protect your payroll data and employee information. Security is a top priority across all modules.

Performance appraisals are directly linked to payroll in our system. Bonuses, merit-based increases, and reward payouts can be automatically calculated and disbursed based on appraisal outcomes.

Employees can access their payslips, tax forms, leave deductions, and bonuses through the Employee Self-Service portal. This reduces HR overhead and improves transparency where employees always know what they’re paid and why.